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SIFT and PolyPhen Analysis Database Details
Details of databases used for SIFT analysis
uniref100 from UniProt (Universal Protein Resource)
(http://www.pir.uniprot.org/database/download.shtml)
July 1, 2005
2,392,904 proteins. 91,269 human proteins.
Details of databases used for PolyPhen analysis
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UniProt (ftp://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/complete)
July 7, 2005. Release 5.0.
70,627 human proteins.
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nrdb (non-redundant protein sequence database at NCBI) (ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz)
July 7, 2005. Version 2.2.11.
2,543,645 proteins. 120,733 human proteins.
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PDB (Protein Data Bank) (ftp://ftp.rcsb.org/pub/pdb/data/structures/all/pdb)
July 7, 2005.
66,788 sequences from 31,639 structures.
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DSSP (Database of Secondary Stucture in Proteins) (ftp://ftp.ebi.ac.uk/pub/databases/dssp)
July 7, 2005.
29,833 structures.
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